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Main Challenges of Machine Learning with Solutions

Published On: September 24, 2025

Main Challenges of Machine Learning with Proven Solutions

Machine learning comes with specific challenges, ranging from intricate data preprocessing and model overfitting to scalability and interpretability problems. These main challenges of machine learning threaten model accuracy and deployment. They are overcome by a strong foundation in data handling, algorithm choice, and validation strategies to construct stable and efficient ML systems.

Tackle these main challenges of machine learning with proven solutions to become a machine learning master. Take the next step forward in your career and begin with us by exploring our machine learning course syllabus!

Main Challenges of Machine Learning and Solutions

Below are the main challenges of machine learning, their solutions, real-time examples, and code applications.

Data Bias Challenges in Machine Learning

Challenge: ML models are trained on data, and if data is biased or skewed in the past, the model will reflect and double down on those biases. This results in discriminatory or unfair predictions. 

  • For instance, a loan model trained on data where women were previously rejected for loans will keep on rejecting applications from women, irrespective of their financial situation.

Solution: Mitigate bias through a multi-step approach:

  • Data Collection: Make the training data representative and diverse.
  • Preprocessing: Balance the dataset by applying techniques such as re-sampling (oversampling the minority group) or re-weighting.
  • Algorithmic Fairness: Use fairness metrics (e.g., demographic parity, equal opportunity) and employ specialized libraries such as IBM’s AI Fairness 360 to reduce bias.

Code Example (Python): Using sklearn and AIF360 to detect and avoid bias.

from aif360.datasets import BinaryLabelDataset

from aif360.metrics import ClassificationMetric

from aif360.algorithms.preprocessing import Reweighing

import numpy as np

 

# Load a hypothetical dataset

data = np.random.rand(100, 5)

labels = np.random.randint(0, 2, 100)

# ‘Sex’ is the protected attribute (0=female, 1=male)

protected_attribute = np.random.randint(0, 2, 100)

 

dataset = BinaryLabelDataset(df=pd.DataFrame(data, columns=[f’feature_{i}’ for i in range(5)]).assign(label=labels, sex=protected_attribute),

                             label_names=[‘label’],

                             protected_attribute_names=[‘sex’])

 

privileged_groups = [{‘sex’: 1}]  # male

unprivileged_groups = [{‘sex’: 0}] # female

 

# Check for initial bias

metric_orig = ClassificationMetric(dataset, dataset,

                                   unprivileged_groups=unprivileged_groups,

                                   privileged_groups=privileged_groups)

print(f”Initial Disparate Impact Ratio: {metric_orig.disparate_impact()}”)

 

# Mitigate bias using Reweighing

RW = Reweighing(unprivileged_groups=unprivileged_groups,

               privileged_groups=privileged_groups)

dataset_reweighed = RW.fit_transform(dataset)

 

# Check bias after mitigation

metric_reweighed = ClassificationMetric(dataset_reweighed, dataset_reweighed,

                                       unprivileged_groups=unprivileged_groups,

                                       privileged_groups=privileged_groups)

print(f”Disparate Impact Ratio after Reweighing: {metric_reweighed.disparate_impact()}”)

Real-time Example: Face recognition systems trained primarily on images of lighter-skinned men tend to perform badly on women and minorities. That is an actual example of sample bias.

Application: Recruitment algorithms, criminal justice risk assessment instruments, and financial credit scores.

Overfitting and Underfitting

Challenge:

  • Overfitting: A model learns the training data and the noise on the training data as well as possible, but will do very well only on the training set and not well on new, unseen data. It’s like memorizing test answers without knowing the material.
  • Underfitting: A model is too simplistic to detect the hidden patterns in the data. It does poorly on both the training and test data, like a student who did not study sufficiently.

Solution:

  • Overfitting: Apply regularization (L1, L2) to charge complex models, apply dropout to neural networks, cross-validation to estimate a more accurate performance, and reduce the complexity of the model. Increasing the training data size and diversity also enables the model to generalize better.
  • Underfitting: Apply a more complex model (e.g., a deeper network or a stronger algorithm), include more features, or decrease regularization.

Code Example (Python): Regularization to avoid overfitting in linear regression.

from sklearn.linear_model import Ridge # L2 Regularization

from sklearn.model_selection import train_test_split

from sklearn.metrics import mean_squared_error

import numpy as np

 

# Sample data

X = np.random.rand(100, 5)

y = 2*X[:,0] + 3*X[:,1] – 5*X[:,2] + np.random.randn(100)*10 # Noisy data to simulate overfitting

X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2, random_state=42)

 

# Overfitting model (simple Linear Regression)

from sklearn.linear_model import LinearRegression

model_overfit = LinearRegression()

model_overfit.fit(X_train, y_train)

print(f”Overfit Model Train MSE: {mean_squared_error(y_train, model_overfit.predict(X_train)):.2f}”)

print(f”Overfit Model Test MSE: {mean_squared_error(y_test, model_overfit.predict(X_test)):.2f}”)

 

# Regularized model (Ridge Regression)

model_regularized = Ridge(alpha=10.0) # alpha is the regularization strength

model_regularized.fit(X_train, y_train)

print(f”Regularized Model Train MSE: {mean_squared_error(y_train, model_regularized.predict(X_train)):.2f}”)

print(f”Regularized Model Test MSE: {mean_squared_error(y_test, model_regularized.predict(X_test)):.2f}”)

Note: The alpha parameter can be adjusted to determine the ideal balance.

Real-time Example: An overfitting spam filter may learn to reject messages with a highly distinctive set of keywords from the training data but end up rejecting new kinds of spam.

Application: Predictive maintenance, fraud detection, and image classification.

Recommended: Machine Learning Tutorial for Beginners.

Data Leakage in Machine Learning

Challenge: Data leakage results when data from outside the training set is utilized to train the model. 

This results in an unrealistically high performance measure (e.g., high accuracy) while training but a sharp decline in performance when applying it in a real situation. It is like obtaining the solutions to a test prior to taking the test.

Solution: Based on our knowledge, the best solution is to create a hard and correct train-test split prior to transferring to any data preprocessing or feature engineering. For time-series data, always create a chronological split to avoid using “future” data to inform the model.

Code Example (Python): Properly splitting data prior to scaling so as to prevent leakage.

from sklearn.model_selection import train_test_split

from sklearn.preprocessing import MinMaxScaler

from sklearn.linear_model import LogisticRegression

from sklearn.metrics import accuracy_score

import pandas as pd

 

# Hypothetical data with a leaked feature

data = pd.DataFrame({

    ‘feature1’: np.random.rand(100),

    ‘feature2’: np.random.rand(100),

    ‘leaked_info’: np.random.randint(0, 2, 100),

    ‘target’: np.random.randint(0, 2, 100)

})

# The leaked feature gives away information about the target

data[‘target’] = data[‘leaked_info’]

 

# INCORRECT way (leakage occurs)

scaler = MinMaxScaler()

data_scaled = scaler.fit_transform(data.drop(‘target’, axis=1)) # Scales using both train and test data

X_train, X_test, y_train, y_test = train_test_split(data_scaled, data[‘target’], test_size=0.2, random_state=42)

 

# Model performance will be unrealistically high

model_leaky = LogisticRegression()

model_leaky.fit(X_train, y_train)

print(f”Leaky Model Test Accuracy: {accuracy_score(y_test, model_leaky.predict(X_test)):.2f}”)

# CORRECT way (no leakage)

X = data.drop(‘target’, axis=1)

y = data[‘target’]

X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2, random_state=42)

# Scale separately for train and test sets

scaler_correct = MinMaxScaler()

X_train_scaled = scaler_correct.fit_transform(X_train)

X_test_scaled = scaler_correct.transform(X_test)

model_correct = LogisticRegression()

model_correct.fit(X_train_scaled, y_train)

print(f”Correct Model Test Accuracy: {accuracy_score(y_test, model_correct.predict(X_test_scaled)):.2f}”)

Note: The accuracy of the proper model will be significantly lower, which is a more practical measurement.

Real-time Example: In a credit card fraud detection system, a feature is constructed that determines a transaction to be fraudulent when the card is blocked subsequent to the transaction. This data is present in the training data but not during a real-world prediction.

Application: Fraud detection, customer churn prediction, and predictive analytics in finance.

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Inadequate High-Quality Data

Challenge: Inadequate data quality (missing values, errors, noise) and lack of an adequate amount of data are inherent issues. Models with low-quality data will generate inaccurate and unreliable results.

Solution:

  • Data Augmentation: Manually augment the size of the dataset by generating new data based on existing instances (e.g., rotating or flipping images).
  • Data Cleaning: Adopt strong data preprocessing pipelines to manage missing values (imputation), outliers, and error correction.
  • Synthetic Data Generation: For extremely small datasets, create new, synthetic data points through methods such as Generative Adversarial Networks (GANs).

Real-time Example: A diagnosis model trained on a small, noisy X-ray dataset may not be able to accurately diagnose diseases in real patients, resulting in misdiagnosis.

Application: Computer vision, natural language processing, and medical imaging.

Datasets with Imbalance

Challenge: Frequent case for classification problems where one class is highly underrepresented relative to others. The model starts to be biased toward the majority class and performs badly on the minority class, the one of most concern (e.g., fraudulent activity, rare diseases).

Solution:

  • Resampling: Oversample the minority class (e.g., using SMOTE) or undersample the majority class.
  • Class Weights: Impose a larger penalty on misclassifying the minority class in model training.
  • Evaluation Metrics: Employ metrics such as Precision, Recall, F1-Score, or AUC-ROC rather than plain accuracy, since accuracy is deceptive on imbalanced datasets.

Code Example (Python): Dealing with an imbalanced dataset with SMOTE.

from imblearn.over_sampling import SMOTE

from sklearn.model_selection import train_test_split

from sklearn.linear_model import LogisticRegression

from sklearn.metrics import recall_score

import pandas as pd

import numpy as np

 

# Create an imbalanced dataset

X = np.random.rand(1000, 5)

y = np.zeros(1000)

y[:50] = 1 # Only 50 instances of the minority class

 

X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2, random_state=42)

 

# Baseline model (no resampling)

model_baseline = LogisticRegression()

model_baseline.fit(X_train, y_train)

print(f”Baseline Model Recall (minority class): {recall_score(y_test, model_baseline.predict(X_test)):.2f}”)

 

# Model with SMOTE

smote = SMOTE(random_state=42)

X_train_resampled, y_train_resampled = smote.fit_resample(X_train, y_train)

 

model_smote = LogisticRegression()

model_smote.fit(X_train_resampled, y_train_resampled)

print(f”SMOTE Model Recall (minority class): {recall_score(y_test, model_smote.predict(X_test)):.2f}”)

Real-time Example: Detection of fraudulent transactions, where fraudulent transactions are a small subset of all transactions.

Application: Anomaly detection, fraud detection, and medical diagnosis.

Explore: Machine Learning Course Online.

Scalability Challenge in Machine Learning

Challenge: As data sets reach petabytes and models get more sophisticated (e.g., large language models), training and deployment become computationally and economically impossible without dedicated hardware and infrastructure.

Solution:

  • Distributed Computing: Employ libraries such as Apache Spark or Dask to split the data and computation over multiple machines.
  • Cloud Computing: Utilize cloud platforms (AWS, Google Cloud, Azure) with dedicated hardware such as GPUs and TPUs.
  • Model Optimization: Employ methods such as model quantization, pruning, and knowledge distillation to optimize model size and efficiency for deployment on edge devices.

Real-time Example: Training a huge recommendation system for a platform such as Netflix with millions of users and movies.

Application: Large-scale e-commerce, social media feeds, and search engines.

 

Feature Engineering Challenge in Machine Learning

Challenge: Raw data is usually not in a format that is ready to feed into machine learning algorithms. The art and science of turning raw data into effective features is crucial and can make or break a model’s performance.

Solution:

  • Domain Expertise: Work with subject matter experts to find and design relevant features.
  • Automated Feature Engineering: Leverage libraries such as featuretools or AutoML platforms to automate the task.
  • Feature Selection and Scaling: Employ methods such as Min-Max scaling or Z-score normalization and perform feature selection techniques (e.g., applying Lasso regularization or tree-based feature importance) to eliminate irrelevant or redundant features.

Code Example (Python): Using feature_selection to choose the most significant features.

from sklearn.ensemble import RandomForestClassifier

from sklearn.feature_selection import SelectFromModel

import pandas as pd

import numpy as np

# Create a dataset with some irrelevant features

X = pd.DataFrame(np.random.rand(100, 10), columns=[f’feature_{i}’ for i in range(10)])

y = (X[‘feature_0’] + X[‘feature_2’] > 1).astype(int) # Only feature 0 and 2 are relevant

 

# Feature selection using a Random Forest model

sfm = SelectFromModel(RandomForestClassifier(n_estimators=100, random_state=42), threshold=’median’)

sfm.fit(X, y)

 

# Transform the data to keep only the selected features

X_selected = sfm.transform(X)

 

print(f”Original number of features: {X.shape[1]}”)

print(f”Number of features after selection: {X_selected.shape[1]}”)

Real-time Example: Deriving novel features for a stock forecast model, e.g., moving averages, volatility, or technical indicators, from raw historical stock price data.

Application: Financial modeling, predictive analytics, and bioinformatics.

Explore: All Trending Software Courses.

Conclusion

Understanding the intricacies of machine learning, ranging from the management of biased data to avoiding overfitting, is crucial for developing stable and reliable AI systems. Having an in-depth knowledge of these main challenges of machine learning and their solutions ensures models that are not only precise but also equitable, scalable, and secure.

Don’t let these machine learning challenges deter you. Our top Machine Learning course in Chennai offers the in-depth understanding and practical solutions you need to become a competent ML practitioner. Sign up now and reshape your career!. 

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